HL_9BDP_125

3D structure

PDB id

9BDP (explore in PDB, NAKB, or RNA 3D Hub)

Description

80S ribosome bound with angiogenin and complex of eEF1A and Ala-tRNAAla

Experimental method

ELECTRON MICROSCOPY

Resolution

3.7 Å

Loop

Sequence

CUAUUUUGUUGGUUUUCGG

Length

19 nucleotides

Bulged bases

9BDP|1|A18S|U|890

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_9BDP_125 not in the Motif Atlas

Homologous match to HL_8P9A_208

Geometric discrepancy: 0.5516

The information below is about HL_8P9A_208

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

9BDP|1|A18S|C|884
9BDP|1|A18S|U|885
9BDP|1|A18S|A|886
9BDP|1|A18S|U|887
9BDP|1|A18S|U|888
9BDP|1|A18S|U|889
9BDP|1|A18S|U|890
9BDP|1|A18S|G|891
9BDP|1|A18S|U|892
9BDP|1|A18S|U|893
9BDP|1|A18S|G|894
9BDP|1|A18S|G|895
9BDP|1|A18S|U|896
9BDP|1|A18S|U|897
9BDP|1|A18S|U|898
9BDP|1|A18S|U|899
9BDP|1|A18S|C|900
9BDP|1|A18S|G|901
9BDP|1|A18S|G|902

Current chains

Chain A18S

18S rRNA

Nearby chains

Chain AS06

40S ribosomal protein S6