HL_9BDP_135

3D structure

PDB id

9BDP (explore in PDB, NAKB, or RNA 3D Hub)

Description

80S ribosome bound with angiogenin and complex of eEF1A and Ala-tRNAAla

Experimental method

ELECTRON MICROSCOPY

Resolution

3.7 Å

Loop

Sequence

GGGUUCCUCCC

Length

11 nucleotides

Bulged bases

9BDP|1|A58S|C|125

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

9BDP|1|A58S|G|120
9BDP|1|A58S|G|121
9BDP|1|A58S|G|122
9BDP|1|A58S|U|123
9BDP|1|A58S|U|124
9BDP|1|A58S|C|125
9BDP|1|A58S|C|126
9BDP|1|A58S|U|127
9BDP|1|A58S|C|128
9BDP|1|A58S|C|129
9BDP|1|A58S|C|130

Current chains

Chain A58S

5.8S rRNA

Nearby chains

Chain A28S

Large subunit ribosomal RNA; LSU rRNA

Chain AL25

Large ribosomal subunit protein uL23