HL_9BDP_141

3D structure

PDB id

9BDP (explore in PDB, NAKB, or RNA 3D Hub)

Description

80S ribosome bound with angiogenin and complex of eEF1A and Ala-tRNAAla

Experimental method

ELECTRON MICROSCOPY

Resolution

3.7 Å

Loop

Sequence

GUUCUCUUU

Length

9 nucleotides

Bulged bases

9BDP|1|A28S|C|2627, 9BDP|1|A28S|U|2631

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_9BDP_141 not in the Motif Atlas

Homologous match to HL_8P9A_148

Geometric discrepancy: 0.3409

The information below is about HL_8P9A_148

Detailed Annotation

Pseudoknot geometry

Broad Annotation

Pseudoknot geometry

Motif group

HL_68642.1

Basepair signature

cWW-F-F-F-F-F-F

Number of instances in this motif group

12

Unit IDs

9BDP|1|A28S|G|2624
9BDP|1|A28S|U|2625
9BDP|1|A28S|U|2626
9BDP|1|A28S|C|2627
9BDP|1|A28S|U|2628
9BDP|1|A28S|C|2629
9BDP|1|A28S|U|2630
9BDP|1|A28S|U|2631
9BDP|1|A28S|U|2632

Current chains

Chain A28S

28S rRNA

Nearby chains

Chain AL19

60S ribosomal protein L19

Chain AL22

Large ribosomal subunit protein eL22