HL_9BKD_003

3D structure

PDB id

9BKD (explore in PDB, NAKB, or RNA 3D Hub)

Description

The structure of human Pdcd4 bound to the 40S small ribosomal subunit

Experimental method

ELECTRON MICROSCOPY

Resolution

2.6 Å

Loop

Sequence

GUA(A2M)UUC

Length

7 nucleotides

Bulged bases

9BKD|1|A|A|158, 9BKD|1|A|U|160, 9BKD|1|A|U|161

QA status

Modified nucleotides: A2M

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_9BKD_003 not in the Motif Atlas

Homologous match to HL_8C3A_194

Geometric discrepancy: 0.0904

The information below is about HL_8C3A_194

Detailed Annotation

GNRA related

Broad Annotation

GNRA related

Motif group

HL_37824.5

Basepair signature

cWW-F-F-F-F

Number of instances in this motif group

302

Unit IDs

9BKD|1|A|G|156
9BKD|1|A|U|157
9BKD|1|A|A|158
9BKD|1|A|A2M|159
9BKD|1|A|U|160
9BKD|1|A|U|161
9BKD|1|A|C|162

Current chains

Chain A

18S rRNA

Nearby chains

Chain S

Small ribosomal subunit protein eS6

Chain T

Small ribosomal subunit protein eS24