HL_9BKD_005

3D structure

PDB id

9BKD (explore in PDB, NAKB, or RNA 3D Hub)

Description

The structure of human Pdcd4 bound to the 40S small ribosomal subunit

Experimental method

ELECTRON MICROSCOPY

Resolution

2.6 Å

Loop

Sequence

GGUGACUC

Length

8 nucleotides

Bulged bases

9BKD|1|A|U|294

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_9BKD_005 not in the Motif Atlas

Geometric match to HL_1WZ2_007

Geometric discrepancy: 0.1903

The information below is about HL_1WZ2_007

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_75660.7

Basepair signature

cWW-F

Number of instances in this motif group

22

Unit IDs

9BKD|1|A|G|288
9BKD|1|A|G|289
9BKD|1|A|U|290
9BKD|1|A|G|291
9BKD|1|A|A|292
9BKD|1|A|C|293
9BKD|1|A|U|294
9BKD|1|A|C|295

Current chains

Chain A

18S rRNA

Nearby chains

Chain B

Small ribosomal subunit protein uS17

Chain C

Small ribosomal subunit protein eS4, X isoform

Chain S

Small ribosomal subunit protein eS6