HL_9BKD_012

3D structure

PDB id

9BKD (explore in PDB, NAKB, or RNA 3D Hub)

Description

The structure of human Pdcd4 bound to the 40S small ribosomal subunit

Experimental method

ELECTRON MICROSCOPY

Resolution

2.6 Å

Loop

Sequence

UCUUUCG

Length

7 nucleotides

Bulged bases

9BKD|1|A|C|539

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_9BKD_012 not in the Motif Atlas

Geometric match to HL_1GID_008

Geometric discrepancy: 0.3948

The information below is about HL_1GID_008

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_50621.1

Basepair signature

cWW-F

Number of instances in this motif group

2

Unit IDs

9BKD|1|A|U|538
9BKD|1|A|C|539
9BKD|1|A|U|540
9BKD|1|A|U|541
9BKD|1|A|U|542
9BKD|1|A|C|543
9BKD|1|A|G|544

Current chains

Chain A

18S rRNA

Nearby chains