HL_9BKD_015

3D structure

PDB id

9BKD (explore in PDB, NAKB, or RNA 3D Hub)

Description

The structure of human Pdcd4 bound to the 40S small ribosomal subunit

Experimental method

ELECTRON MICROSCOPY

Resolution

2.6 Å

Loop

Sequence

UG(PSU)(PSU)CAAAG

Length

9 nucleotides

Bulged bases

9BKD|1|A|G|821

QA status

Modified nucleotides: PSU

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_9BKD_015 not in the Motif Atlas

Homologous match to HL_4V88_203

Geometric discrepancy: 0.0693

The information below is about HL_4V88_203

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_47383.2

Basepair signature

cWW-F-F-cWW-F-F

Number of instances in this motif group

11

Unit IDs

9BKD|1|A|U|820
9BKD|1|A|G|821
9BKD|1|A|PSU|822
9BKD|1|A|PSU|823
9BKD|1|A|C|824
9BKD|1|A|A|825
9BKD|1|A|A|826
9BKD|1|A|A|827
9BKD|1|A|G|828

Current chains

Chain A

18S rRNA

Nearby chains

Chain C

Small ribosomal subunit protein eS4, X isoform

Chain D

Small ribosomal subunit protein uS4

Chain T

Small ribosomal subunit protein eS24