HL_9BKD_017

3D structure

PDB id

9BKD (explore in PDB, NAKB, or RNA 3D Hub)

Description

The structure of human Pdcd4 bound to the 40S small ribosomal subunit

Experimental method

ELECTRON MICROSCOPY

Resolution

2.6 Å

Loop

Sequence

GUUCUAUUUUGUUGGUUUUCGGAAC

Length

25 nucleotides

Bulged bases

9BKD|1|A|G|891, 9BKD|1|A|U|896

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

9BKD|1|A|G|881
9BKD|1|A|U|882
9BKD|1|A|U|883
9BKD|1|A|C|884
9BKD|1|A|U|885
9BKD|1|A|A|886
9BKD|1|A|U|887
9BKD|1|A|U|888
9BKD|1|A|U|889
9BKD|1|A|U|890
9BKD|1|A|G|891
9BKD|1|A|U|892
9BKD|1|A|U|893
9BKD|1|A|G|894
9BKD|1|A|G|895
9BKD|1|A|U|896
9BKD|1|A|U|897
9BKD|1|A|U|898
9BKD|1|A|U|899
9BKD|1|A|C|900
9BKD|1|A|G|901
9BKD|1|A|G|902
9BKD|1|A|A|903
9BKD|1|A|A|904
9BKD|1|A|C|905

Current chains

Chain A

18S rRNA

Nearby chains

Chain B

Small ribosomal subunit protein uS17