HL_9BKD_026

3D structure

PDB id

9BKD (explore in PDB, NAKB, or RNA 3D Hub)

Description

The structure of human Pdcd4 bound to the 40S small ribosomal subunit

Experimental method

ELECTRON MICROSCOPY

Resolution

2.6 Å

Loop

Sequence

AGCGAU

Length

6 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_9BKD_026 not in the Motif Atlas

Homologous match to HL_8C3A_219

Geometric discrepancy: 0.0568

The information below is about HL_8C3A_219

Detailed Annotation

GNRA

Broad Annotation

No text annotation

Motif group

HL_37824.5

Basepair signature

cWW-F-F-F-F

Number of instances in this motif group

302

Unit IDs

9BKD|1|A|A|1353
9BKD|1|A|G|1354
9BKD|1|A|C|1355
9BKD|1|A|G|1356
9BKD|1|A|A|1357
9BKD|1|A|U|1358

Current chains

Chain A

18S rRNA

Nearby chains

Chain L

40S ribosomal protein S2

Chain N

Small ribosomal subunit protein uS2