HL_9BKD_028

3D structure

PDB id

9BKD (explore in PDB, NAKB, or RNA 3D Hub)

Description

The structure of human Pdcd4 bound to the 40S small ribosomal subunit

Experimental method

ELECTRON MICROSCOPY

Resolution

2.6 Å

Loop

Sequence

CCCCGAGCG

Length

9 nucleotides

Bulged bases

9BKD|1|A|G|1420, 9BKD|1|A|C|1423

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_9BKD_028 not in the Motif Atlas

Homologous match to HL_8C3A_221

Geometric discrepancy: 0.5224

The information below is about HL_8C3A_221

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_48417.3

Basepair signature

cWW-F-F

Number of instances in this motif group

23

Unit IDs

9BKD|1|A|C|1416
9BKD|1|A|C|1417
9BKD|1|A|C|1418
9BKD|1|A|C|1419
9BKD|1|A|G|1420
9BKD|1|A|A|1421
9BKD|1|A|G|1422
9BKD|1|A|C|1423
9BKD|1|A|G|1424

Current chains

Chain A

18S rRNA

Nearby chains

Chain Y

40S ribosomal protein S16

Chain d

40S ribosomal protein S19