HL_9BKD_030

3D structure

PDB id

9BKD (explore in PDB, NAKB, or RNA 3D Hub)

Description

The structure of human Pdcd4 bound to the 40S small ribosomal subunit

Experimental method

ELECTRON MICROSCOPY

Resolution

2.6 Å

Loop

Sequence

CGGCAG

Length

6 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_9BKD_030 not in the Motif Atlas

Homologous match to HL_8C3A_223

Geometric discrepancy: 0.2902

The information below is about HL_8C3A_223

Detailed Annotation

GNRA

Broad Annotation

No text annotation

Motif group

HL_37824.5

Basepair signature

cWW-F-F-F-F

Number of instances in this motif group

302

Unit IDs

9BKD|1|A|C|1565
9BKD|1|A|G|1566
9BKD|1|A|G|1567
9BKD|1|A|C|1568
9BKD|1|A|A|1569
9BKD|1|A|G|1570

Current chains

Chain A

18S rRNA

Nearby chains

Chain d

40S ribosomal protein S19

Chain f

Small ribosomal subunit protein uS13