HL_9BLN_007

3D structure

PDB id

9BLN (explore in PDB, NAKB, or RNA 3D Hub)

Description

The structure of human Pdcd4 bound to the 40S-eIF4A-eIF3-eIF1 complex

Experimental method

ELECTRON MICROSCOPY

Resolution

3.9 Å

Loop

Sequence

GUCGCCGUGCC

Length

11 nucleotides

Bulged bases

9BLN|1|A|G|385

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_9BLN_007 not in the Motif Atlas

Geometric match to HL_1KH6_003

Geometric discrepancy: 0.3403

The information below is about HL_1KH6_003

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_33487.1

Basepair signature

cWW-cWW

Number of instances in this motif group

2

Unit IDs

9BLN|1|A|G|377
9BLN|1|A|U|378
9BLN|1|A|C|379
9BLN|1|A|G|380
9BLN|1|A|C|381
9BLN|1|A|C|382
9BLN|1|A|G|383
9BLN|1|A|U|384
9BLN|1|A|G|385
9BLN|1|A|C|386
9BLN|1|A|C|387

Current chains

Chain A

rRNA

Nearby chains

Chain B

Small ribosomal subunit protein uS17

Chain R

Small ribosomal subunit protein eS8