HL_9BLN_028

3D structure

PDB id

9BLN (explore in PDB, NAKB, or RNA 3D Hub)

Description

The structure of human Pdcd4 bound to the 40S-eIF4A-eIF3-eIF1 complex

Experimental method

ELECTRON MICROSCOPY

Resolution

3.9 Å

Loop

Sequence

CCCCGAGCG

Length

9 nucleotides

Bulged bases

9BLN|1|A|G|1420, 9BLN|1|A|C|1423

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_9BLN_028 not in the Motif Atlas

Homologous match to HL_8C3A_221

Geometric discrepancy: 0.5368

The information below is about HL_8C3A_221

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_48417.3

Basepair signature

cWW-F-F

Number of instances in this motif group

23

Unit IDs

9BLN|1|A|C|1416
9BLN|1|A|C|1417
9BLN|1|A|C|1418
9BLN|1|A|C|1419
9BLN|1|A|G|1420
9BLN|1|A|A|1421
9BLN|1|A|G|1422
9BLN|1|A|C|1423
9BLN|1|A|G|1424

Current chains

Chain A

rRNA

Nearby chains

Chain Y

Small ribosomal subunit protein uS9

Chain d

Small ribosomal subunit protein eS19