HL_9BLN_030

3D structure

PDB id

9BLN (explore in PDB, NAKB, or RNA 3D Hub)

Description

The structure of human Pdcd4 bound to the 40S-eIF4A-eIF3-eIF1 complex

Experimental method

ELECTRON MICROSCOPY

Resolution

3.9 Å

Loop

Sequence

CGGCAG

Length

6 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_9BLN_030 not in the Motif Atlas

Homologous match to HL_8C3A_223

Geometric discrepancy: 0.297

The information below is about HL_8C3A_223

Detailed Annotation

GNRA

Broad Annotation

No text annotation

Motif group

HL_37824.5

Basepair signature

cWW-F-F-F-F

Number of instances in this motif group

302

Unit IDs

9BLN|1|A|C|1565
9BLN|1|A|G|1566
9BLN|1|A|G|1567
9BLN|1|A|C|1568
9BLN|1|A|A|1569
9BLN|1|A|G|1570

Current chains

Chain A

rRNA

Nearby chains

Chain b

Small ribosomal subunit protein uS19

Chain d

Small ribosomal subunit protein eS19

Chain f

Small ribosomal subunit protein uS13