HL_9BS0_007

3D structure

PDB id

9BS0 (explore in PDB, NAKB, or RNA 3D Hub)

Description

YphC-treated 45SYphC particle. Class 5

Experimental method

ELECTRON MICROSCOPY

Resolution

3.3 Å

Loop

Sequence

CAAAUG

Length

6 nucleotides

Bulged bases

9BS0|1|A|U|232

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_9BS0_007 not in the Motif Atlas

Geometric match to HL_1H4S_002

Geometric discrepancy: 0.2505

The information below is about HL_1H4S_002

Detailed Annotation

tRNA anticodon loop with synthetase

Broad Annotation

tRNA anticodon loop with synthetase

Motif group

HL_89167.1

Basepair signature

cWW-F-F

Number of instances in this motif group

20

Unit IDs

9BS0|1|A|C|228
9BS0|1|A|A|229
9BS0|1|A|A|230
9BS0|1|A|A|231
9BS0|1|A|U|232
9BS0|1|A|G|233

Current chains

Chain A

23S rRNA

Nearby chains

Chain I

Large ribosomal subunit protein uL15