HL_9BS0_012

3D structure

PDB id

9BS0 (explore in PDB, NAKB, or RNA 3D Hub)

Description

YphC-treated 45SYphC particle. Class 5

Experimental method

ELECTRON MICROSCOPY

Resolution

3.3 Å

Loop

Sequence

GUAACAGCC

Length

9 nucleotides

Bulged bases

9BS0|1|A|A|373, 9BS0|1|A|A|374, 9BS0|1|A|C|375

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_9BS0_012 not in the Motif Atlas

Homologous match to HL_4WF9_012

Geometric discrepancy: 0.1705

The information below is about HL_4WF9_012

Detailed Annotation

T-loop with unstacked turn

Broad Annotation

T-loop

Motif group

HL_27670.3

Basepair signature

cWW-tWH-F-F

Number of instances in this motif group

15

Unit IDs

9BS0|1|A|G|371
9BS0|1|A|U|372
9BS0|1|A|A|373
9BS0|1|A|A|374
9BS0|1|A|C|375
9BS0|1|A|A|376
9BS0|1|A|G|377
9BS0|1|A|C|378
9BS0|1|A|C|379

Current chains

Chain A

23S rRNA

Nearby chains

Chain E

Large ribosomal subunit protein uL4

Chain P

Large ribosomal subunit protein uL24