HL_9BS0_018

3D structure

PDB id

9BS0 (explore in PDB, NAKB, or RNA 3D Hub)

Description

YphC-treated 45SYphC particle. Class 5

Experimental method

ELECTRON MICROSCOPY

Resolution

3.3 Å

Loop

Sequence

UUUUGUAGAA

Length

10 nucleotides

Bulged bases

9BS0|1|A|A|618

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_9BS0_018 not in the Motif Atlas

Homologous match to HL_5J7L_150

Geometric discrepancy: 0.2327

The information below is about HL_5J7L_150

Detailed Annotation

T-loop with 2 stacked bulged bases

Broad Annotation

T-loop

Motif group

HL_28252.9

Basepair signature

cWW-tWH-F-F-F-F-F

Number of instances in this motif group

141

Unit IDs

9BS0|1|A|U|610
9BS0|1|A|U|611
9BS0|1|A|U|612
9BS0|1|A|U|613
9BS0|1|A|G|614
9BS0|1|A|U|615
9BS0|1|A|A|616
9BS0|1|A|G|617
9BS0|1|A|A|618
9BS0|1|A|A|619

Current chains

Chain A

23S rRNA

Nearby chains

Chain I

Large ribosomal subunit protein uL15

Chain M

Large ribosomal subunit protein bL21