HL_9BS0_031

3D structure

PDB id

9BS0 (explore in PDB, NAKB, or RNA 3D Hub)

Description

YphC-treated 45SYphC particle. Class 5

Experimental method

ELECTRON MICROSCOPY

Resolution

3.3 Å

Loop

Sequence

GCUCGUC

Length

7 nucleotides

Bulged bases

9BS0|1|A|C|1364, 9BS0|1|A|U|1368

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_9BS0_031 not in the Motif Atlas

Homologous match to HL_4WF9_033

Geometric discrepancy: 0.1761

The information below is about HL_4WF9_033

Detailed Annotation

Pseudoknot geometry with 3' bulge

Broad Annotation

No text annotation

Motif group

HL_49081.1

Basepair signature

cWW-F-F-F

Number of instances in this motif group

17

Unit IDs

9BS0|1|A|G|1363
9BS0|1|A|C|1364
9BS0|1|A|U|1365
9BS0|1|A|C|1366
9BS0|1|A|G|1367
9BS0|1|A|U|1368
9BS0|1|A|C|1369

Current chains

Chain A

23S rRNA

Nearby chains

Chain J

Large ribosomal subunit protein bL17

Chain N

Large ribosomal subunit protein uL22