HL_9BS0_033

3D structure

PDB id

9BS0 (explore in PDB, NAKB, or RNA 3D Hub)

Description

YphC-treated 45SYphC particle. Class 5

Experimental method

ELECTRON MICROSCOPY

Resolution

3.3 Å

Loop

Sequence

GUUGAUAUUC

Length

10 nucleotides

Bulged bases

9BS0|1|A|U|1430, 9BS0|1|A|U|1435, 9BS0|1|A|U|1436

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_9BS0_033 not in the Motif Atlas

Homologous match to HL_5J7L_168

Geometric discrepancy: 0.2259

The information below is about HL_5J7L_168

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_81545.2

Basepair signature

cWW-tWH-F-F-F-F

Number of instances in this motif group

7

Unit IDs

9BS0|1|A|G|1428
9BS0|1|A|U|1429
9BS0|1|A|U|1430
9BS0|1|A|G|1431
9BS0|1|A|A|1432
9BS0|1|A|U|1433
9BS0|1|A|A|1434
9BS0|1|A|U|1435
9BS0|1|A|U|1436
9BS0|1|A|C|1437

Current chains

Chain A

23S rRNA

Nearby chains

Chain O

Large ribosomal subunit protein uL23