HL_9BS0_034

3D structure

PDB id

9BS0 (explore in PDB, NAKB, or RNA 3D Hub)

Description

YphC-treated 45SYphC particle. Class 5

Experimental method

ELECTRON MICROSCOPY

Resolution

3.3 Å

Loop

Sequence

GGUAUUGGAUAU

Length

12 nucleotides

Bulged bases

9BS0|1|A|A|1499, 9BS0|1|A|U|1500, 9BS0|1|A|A|1506

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_9BS0_034 not in the Motif Atlas

Geometric match to HL_5J7L_214

Geometric discrepancy: 0.3833

The information below is about HL_5J7L_214

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_08100.1

Basepair signature

cWW-F-F-F

Number of instances in this motif group

4

Unit IDs

9BS0|1|A|G|1496
9BS0|1|A|G|1497
9BS0|1|A|U|1498
9BS0|1|A|A|1499
9BS0|1|A|U|1500
9BS0|1|A|U|1501
9BS0|1|A|G|1502
9BS0|1|A|G|1503
9BS0|1|A|A|1504
9BS0|1|A|U|1505
9BS0|1|A|A|1506
9BS0|1|A|U|1507

Current chains

Chain A

23S rRNA

Nearby chains

Chain J

Large ribosomal subunit protein bL17