HL_9BS0_041

3D structure

PDB id

9BS0 (explore in PDB, NAKB, or RNA 3D Hub)

Description

YphC-treated 45SYphC particle. Class 5

Experimental method

ELECTRON MICROSCOPY

Resolution

3.3 Å

Loop

Sequence

UGCAAG

Length

6 nucleotides

Bulged bases

None detected

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_9BS0_041 not in the Motif Atlas

Homologous match to HL_4WF9_071

Geometric discrepancy: 0.4135

The information below is about HL_4WF9_071

Detailed Annotation

GNRA

Broad Annotation

No text annotation

Motif group

HL_34789.1

Basepair signature

cWW-F-F-F-F

Number of instances in this motif group

335

Unit IDs

9BS0|1|A|U|1764
9BS0|1|A|G|1765
9BS0|1|A|C|1766
9BS0|1|A|A|1767
9BS0|1|A|A|1768
9BS0|1|A|G|1769

Current chains

Chain A

23S rRNA

Nearby chains