HL_9BS0_045

3D structure

PDB id

9BS0 (explore in PDB, NAKB, or RNA 3D Hub)

Description

YphC-treated 45SYphC particle. Class 5

Experimental method

ELECTRON MICROSCOPY

Resolution

3.3 Å

Loop

Sequence

GUGAAGAUGC

Length

10 nucleotides

Bulged bases

9BS0|1|A|A|2059, 9BS0|1|A|A|2060, 9BS0|1|A|G|2061

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_9BS0_045 not in the Motif Atlas

Homologous match to HL_5J7L_183

Geometric discrepancy: 0.1452

The information below is about HL_5J7L_183

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_61996.3

Basepair signature

cWW-tWH-F-F-F

Number of instances in this motif group

7

Unit IDs

9BS0|1|A|G|2056
9BS0|1|A|U|2057
9BS0|1|A|G|2058
9BS0|1|A|A|2059
9BS0|1|A|A|2060
9BS0|1|A|G|2061
9BS0|1|A|A|2062
9BS0|1|A|U|2063
9BS0|1|A|G|2064
9BS0|1|A|C|2065

Current chains

Chain A

23S rRNA

Nearby chains

Chain T

Large ribosomal subunit protein bL32