HL_9BS0_048

3D structure

PDB id

9BS0 (explore in PDB, NAKB, or RNA 3D Hub)

Description

YphC-treated 45SYphC particle. Class 5

Experimental method

ELECTRON MICROSCOPY

Resolution

3.3 Å

Loop

Sequence

CUCCUAAAAGGUAACGGAG

Length

19 nucleotides

Bulged bases

9BS0|1|A|U|2291, 9BS0|1|A|A|2296, 9BS0|1|A|A|2297, 9BS0|1|A|A|2302, 9BS0|1|A|A|2303, 9BS0|1|A|C|2304

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

9BS0|1|A|C|2290
9BS0|1|A|U|2291
9BS0|1|A|C|2292
9BS0|1|A|C|2293
9BS0|1|A|U|2294
9BS0|1|A|A|2295
9BS0|1|A|A|2296
9BS0|1|A|A|2297
9BS0|1|A|A|2298
9BS0|1|A|G|2299
9BS0|1|A|G|2300
9BS0|1|A|U|2301
9BS0|1|A|A|2302
9BS0|1|A|A|2303
9BS0|1|A|C|2304
9BS0|1|A|G|2305
9BS0|1|A|G|2306
9BS0|1|A|A|2307
9BS0|1|A|G|2308

Current chains

Chain A

23S rRNA

Nearby chains

Chain Q

Large ribosomal subunit protein bL27

Chain W

GTPase Der