HL_9BS0_050

3D structure

PDB id

9BS0 (explore in PDB, NAKB, or RNA 3D Hub)

Description

YphC-treated 45SYphC particle. Class 5

Experimental method

ELECTRON MICROSCOPY

Resolution

3.3 Å

Loop

Sequence

CGCAUGGAAG

Length

10 nucleotides

Bulged bases

9BS0|1|A|C|2435

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_9BS0_050 not in the Motif Atlas

Homologous match to HL_4WF9_055

Geometric discrepancy: 0.2263

The information below is about HL_4WF9_055

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_51853.1

Basepair signature

cWW-tSH-F-F-F-F-F

Number of instances in this motif group

5

Unit IDs

9BS0|1|A|C|2433
9BS0|1|A|G|2434
9BS0|1|A|C|2435
9BS0|1|A|A|2436
9BS0|1|A|U|2437
9BS0|1|A|G|2438
9BS0|1|A|G|2439
9BS0|1|A|A|2440
9BS0|1|A|A|2441
9BS0|1|A|G|2442

Current chains

Chain A

23S rRNA

Nearby chains

Chain I

Large ribosomal subunit protein uL15