HL_9BS0_058

3D structure

PDB id

9BS0 (explore in PDB, NAKB, or RNA 3D Hub)

Description

YphC-treated 45SYphC particle. Class 5

Experimental method

ELECTRON MICROSCOPY

Resolution

3.3 Å

Loop

Sequence

AAAGAUGAU

Length

9 nucleotides

Bulged bases

9BS0|1|A|A|2845

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_9BS0_058 not in the Motif Atlas

Homologous match to HL_4WF9_064

Geometric discrepancy: 0.209

The information below is about HL_4WF9_064

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_37889.1

Basepair signature

cWW-cSW-F-F-F-F

Number of instances in this motif group

12

Unit IDs

9BS0|1|A|A|2844
9BS0|1|A|A|2845
9BS0|1|A|A|2846
9BS0|1|A|G|2847
9BS0|1|A|A|2848
9BS0|1|A|U|2849
9BS0|1|A|G|2850
9BS0|1|A|A|2851
9BS0|1|A|U|2852

Current chains

Chain A

23S rRNA

Nearby chains

Chain D

Large ribosomal subunit protein uL3

Chain J

Large ribosomal subunit protein bL17