HL_9BSS_002

3D structure

PDB id

9BSS (explore in PDB, NAKB, or RNA 3D Hub)

Description

45SRbgA particle in complex with RbgA and YphC. Class B

Experimental method

ELECTRON MICROSCOPY

Resolution

3.1 Å

Loop

Sequence

UGUAAGCAA

Length

9 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_9BSS_002 not in the Motif Atlas

Geometric match to HL_4LX6_002

Geometric discrepancy: 0.2544

The information below is about HL_4LX6_002

Detailed Annotation

Purine riboswitch

Broad Annotation

Purine riboswitch

Motif group

HL_56046.1

Basepair signature

cWW-F-F-F-F-F

Number of instances in this motif group

17

Unit IDs

9BSS|1|A|U|87
9BSS|1|A|G|88
9BSS|1|A|U|89
9BSS|1|A|A|90
9BSS|1|A|A|91
9BSS|1|A|G|92
9BSS|1|A|C|93
9BSS|1|A|A|94
9BSS|1|A|A|95

Current chains

Chain A

23S rRNA

Nearby chains

Chain O

Large ribosomal subunit protein uL23

Chain P

Large ribosomal subunit protein uL24

Chain R

Large ribosomal subunit protein uL29