HL_9BSS_011

3D structure

PDB id

9BSS (explore in PDB, NAKB, or RNA 3D Hub)

Description

45SRbgA particle in complex with RbgA and YphC. Class B

Experimental method

ELECTRON MICROSCOPY

Resolution

3.1 Å

Loop

Sequence

CAUAG

Length

5 nucleotides

Bulged bases

9BSS|1|A|U|365, 9BSS|1|A|A|366

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_9BSS_011 not in the Motif Atlas

Geometric match to HL_5J7L_143

Geometric discrepancy: 0.0711

The information below is about HL_5J7L_143

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_75660.5

Basepair signature

cWW-F

Number of instances in this motif group

19

Unit IDs

9BSS|1|A|C|363
9BSS|1|A|A|364
9BSS|1|A|U|365
9BSS|1|A|A|366
9BSS|1|A|G|367

Current chains

Chain A

23S rRNA

Nearby chains

Chain E

Large ribosomal subunit protein uL4