HL_9BSS_012

3D structure

PDB id

9BSS (explore in PDB, NAKB, or RNA 3D Hub)

Description

45SRbgA particle in complex with RbgA and YphC. Class B

Experimental method

ELECTRON MICROSCOPY

Resolution

3.1 Å

Loop

Sequence

GUAACAGCC

Length

9 nucleotides

Bulged bases

9BSS|1|A|A|373, 9BSS|1|A|A|374, 9BSS|1|A|C|375

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_9BSS_012 not in the Motif Atlas

Homologous match to HL_4WF9_012

Geometric discrepancy: 0.1462

The information below is about HL_4WF9_012

Detailed Annotation

T-loop with unstacked turn

Broad Annotation

T-loop

Motif group

HL_27670.6

Basepair signature

cWW-tWH-F-F

Number of instances in this motif group

17

Unit IDs

9BSS|1|A|G|371
9BSS|1|A|U|372
9BSS|1|A|A|373
9BSS|1|A|A|374
9BSS|1|A|C|375
9BSS|1|A|A|376
9BSS|1|A|G|377
9BSS|1|A|C|378
9BSS|1|A|C|379

Current chains

Chain A

23S rRNA

Nearby chains

Chain E

Large ribosomal subunit protein uL4

Chain P

Large ribosomal subunit protein uL24