HL_9BSS_023

3D structure

PDB id

9BSS (explore in PDB, NAKB, or RNA 3D Hub)

Description

45SRbgA particle in complex with RbgA and YphC. Class B

Experimental method

ELECTRON MICROSCOPY

Resolution

3.1 Å

Loop

Sequence

CGUUGAAAAG

Length

10 nucleotides

Bulged bases

9BSS|1|A|U|794, 9BSS|1|A|A|798, 9BSS|1|A|A|799

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_9BSS_023 not in the Motif Atlas

Homologous match to HL_4WF9_023

Geometric discrepancy: 0.1176

The information below is about HL_4WF9_023

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_50204.3

Basepair signature

cWW-cWS-tSW-F-F

Number of instances in this motif group

12

Unit IDs

9BSS|1|A|C|791
9BSS|1|A|G|792
9BSS|1|A|U|793
9BSS|1|A|U|794
9BSS|1|A|G|795
9BSS|1|A|A|796
9BSS|1|A|A|797
9BSS|1|A|A|798
9BSS|1|A|A|799
9BSS|1|A|G|800

Current chains

Chain A

23S rRNA

Nearby chains

Chain D

Large ribosomal subunit protein uL3

Chain N

Large ribosomal subunit protein uL22

Chain T

Large ribosomal subunit protein bL32

Chain U

Large ribosomal subunit protein bL34