HL_9BSS_025

3D structure

PDB id

9BSS (explore in PDB, NAKB, or RNA 3D Hub)

Description

45SRbgA particle in complex with RbgA and YphC. Class B

Experimental method

ELECTRON MICROSCOPY

Resolution

3.1 Å

Loop

Sequence

GAAACAGC

Length

8 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_9BSS_025 not in the Motif Atlas

Homologous match to HL_4WF9_028

Geometric discrepancy: 0.173

The information below is about HL_4WF9_028

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_47171.3

Basepair signature

cWW-F-F-F-F-F-F

Number of instances in this motif group

11

Unit IDs

9BSS|1|A|G|1024
9BSS|1|A|A|1025
9BSS|1|A|A|1026
9BSS|1|A|A|1027
9BSS|1|A|C|1028
9BSS|1|A|A|1029
9BSS|1|A|G|1030
9BSS|1|A|C|1031

Current chains

Chain A

23S rRNA

Nearby chains

Chain L

Large ribosomal subunit protein bL20

Chain S

Large ribosomal subunit protein uL30