HL_9BSS_049

3D structure

PDB id

9BSS (explore in PDB, NAKB, or RNA 3D Hub)

Description

45SRbgA particle in complex with RbgA and YphC. Class B

Experimental method

ELECTRON MICROSCOPY

Resolution

3.1 Å

Loop

Sequence

CUGAAAGCAUCUAAG

Length

15 nucleotides

Bulged bases

9BSS|1|A|G|2780

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_9BSS_049 not in the Motif Atlas

Homologous match to HL_9DFE_064

Geometric discrepancy: 0.2506

The information below is about HL_9DFE_064

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_53269.4

Basepair signature

cWW-tWH-tSH-cWH-tSH-tHW-tHW-tSW

Number of instances in this motif group

12

Unit IDs

9BSS|1|A|C|2774
9BSS|1|A|U|2775
9BSS|1|A|G|2776
9BSS|1|A|A|2777
9BSS|1|A|A|2778
9BSS|1|A|A|2779
9BSS|1|A|G|2780
9BSS|1|A|C|2781
9BSS|1|A|A|2782
9BSS|1|A|U|2783
9BSS|1|A|C|2784
9BSS|1|A|U|2785
9BSS|1|A|A|2786
9BSS|1|A|A|2787
9BSS|1|A|G|2788

Current chains

Chain A

23S rRNA

Nearby chains

Chain F

Large ribosomal subunit protein uL6

Chain G

Large ribosomal subunit protein uL13