HL_9BSS_051

3D structure

PDB id

9BSS (explore in PDB, NAKB, or RNA 3D Hub)

Description

45SRbgA particle in complex with RbgA and YphC. Class B

Experimental method

ELECTRON MICROSCOPY

Resolution

3.1 Å

Loop

Sequence

AAAGAUGAU

Length

9 nucleotides

Bulged bases

9BSS|1|A|A|2845

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_9BSS_051 not in the Motif Atlas

Homologous match to HL_4WF9_064

Geometric discrepancy: 0.2622

The information below is about HL_4WF9_064

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_37889.3

Basepair signature

cWW-cSW-F-F-F-F

Number of instances in this motif group

13

Unit IDs

9BSS|1|A|A|2844
9BSS|1|A|A|2845
9BSS|1|A|A|2846
9BSS|1|A|G|2847
9BSS|1|A|A|2848
9BSS|1|A|U|2849
9BSS|1|A|G|2850
9BSS|1|A|A|2851
9BSS|1|A|U|2852

Current chains

Chain A

23S rRNA

Nearby chains

Chain D

Large ribosomal subunit protein uL3

Chain J

Large ribosomal subunit protein bL17