HL_9BUN_005

3D structure

PDB id

9BUN (explore in PDB, NAKB, or RNA 3D Hub)

Description

RhoBAST aptamer RNA in complex with 5(6)-carboxytetramethylrhodamine

Experimental method

X-RAY DIFFRACTION

Resolution

2.1 Å

Loop

Sequence

UGAAGGA

Length

7 nucleotides

Bulged bases

9BUN|1|B|A|17, 9BUN|1|B|G|19

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_9BUN_005 not in the Motif Atlas

Geometric match to HL_2ZNI_001

Geometric discrepancy: 0.22

The information below is about HL_2ZNI_001

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_75660.5

Basepair signature

cWW-F

Number of instances in this motif group

19

Unit IDs

9BUN|1|B|U|14
9BUN|1|B|G|15
9BUN|1|B|A|16
9BUN|1|B|A|17
9BUN|1|B|G|18
9BUN|1|B|G|19
9BUN|1|B|A|20

Current chains

Chain B

RNA (48-MER)

Nearby chains