HL_9C8K_010

3D structure

PDB id

9C8K (explore in PDB, NAKB, or RNA 3D Hub)

Description

Rabbit Hemorrhagic Disease Virus reinitiation stimulating TURBS RNA bound to rabbit ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

3.1 Å

Loop

Sequence

CGACCCG

Length

7 nucleotides

Bulged bases

9C8K|1|1|A|500, 9C8K|1|1|C|502, 9C8K|1|1|C|503

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_9C8K_010 not in the Motif Atlas

Homologous match to HL_8C3A_203

Geometric discrepancy: 0.297

The information below is about HL_8C3A_203

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_48417.3

Basepair signature

cWW-F-F

Number of instances in this motif group

23

Unit IDs

9C8K|1|1|C|498
9C8K|1|1|G|499
9C8K|1|1|A|500
9C8K|1|1|C|501
9C8K|1|1|C|502
9C8K|1|1|C|503
9C8K|1|1|G|504

Current chains

Chain 1

18S ribosomal RNA

Nearby chains

Chain E

40S ribosomal protein eS4

Chain Y

Small ribosomal subunit protein eS24