HL_9C8K_011

3D structure

PDB id

9C8K (explore in PDB, NAKB, or RNA 3D Hub)

Description

Rabbit Hemorrhagic Disease Virus reinitiation stimulating TURBS RNA bound to rabbit ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

3.1 Å

Loop

Sequence

CUUUCG

Length

6 nucleotides

Bulged bases

9C8K|1|1|U|541, 9C8K|1|1|U|542, 9C8K|1|1|C|543

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_9C8K_011 not in the Motif Atlas

Geometric match to HL_5NFV_001

Geometric discrepancy: 0.2974

The information below is about HL_5NFV_001

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_69752.3

Basepair signature

cWW-F

Number of instances in this motif group

5

Unit IDs

9C8K|1|1|C|539
9C8K|1|1|U|540
9C8K|1|1|U|541
9C8K|1|1|U|542
9C8K|1|1|C|543
9C8K|1|1|G|544

Current chains

Chain 1

18S ribosomal RNA

Nearby chains