HL_9C8K_022

3D structure

PDB id

9C8K (explore in PDB, NAKB, or RNA 3D Hub)

Description

Rabbit Hemorrhagic Disease Virus reinitiation stimulating TURBS RNA bound to rabbit ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

3.1 Å

Loop

Sequence

AUUGAUAGCU

Length

10 nucleotides

Bulged bases

9C8K|1|1|U|1300, 9C8K|1|1|G|1302

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_9C8K_022 not in the Motif Atlas

Homologous match to HL_8P9A_216

Geometric discrepancy: 0.3854

The information below is about HL_8P9A_216

Detailed Annotation

GNRA wlth extra near cWW

Broad Annotation

GNRA wlth extra near cWW

Motif group

HL_98423.3

Basepair signature

cWW-tSH-F-F-F-F

Number of instances in this motif group

15

Unit IDs

9C8K|1|1|A|1295
9C8K|1|1|U|1296
9C8K|1|1|U|1297
9C8K|1|1|G|1298
9C8K|1|1|A|1299
9C8K|1|1|U|1300
9C8K|1|1|A|1301
9C8K|1|1|G|1302
9C8K|1|1|C|1303
9C8K|1|1|U|1304

Current chains

Chain 1

18S ribosomal RNA

Nearby chains

Chain P

40S ribosomal protein uS19

Chain d

uS14

Chain f

eS31