HL_9C8K_026

3D structure

PDB id

9C8K (explore in PDB, NAKB, or RNA 3D Hub)

Description

Rabbit Hemorrhagic Disease Virus reinitiation stimulating TURBS RNA bound to rabbit ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

3.1 Å

Loop

Sequence

CGGCAG

Length

6 nucleotides

Bulged bases

None detected

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_9C8K_026 not in the Motif Atlas

Homologous match to HL_8C3A_223

Geometric discrepancy: 0.2449

The information below is about HL_8C3A_223

Detailed Annotation

GNRA

Broad Annotation

No text annotation

Motif group

HL_37824.5

Basepair signature

cWW-F-F-F-F

Number of instances in this motif group

302

Unit IDs

9C8K|1|1|C|1565
9C8K|1|1|G|1566
9C8K|1|1|G|1567
9C8K|1|1|C|1568
9C8K|1|1|A|1569
9C8K|1|1|G|1570

Current chains

Chain 1

18S ribosomal RNA

Nearby chains

Chain P

40S ribosomal protein uS19

Chain S

uS13

Chain T

40S ribosomal protein eS19