HL_9C8K_028
3D structure
- PDB id
- 9C8K (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Rabbit Hemorrhagic Disease Virus reinitiation stimulating TURBS RNA bound to rabbit ribosome
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.1 Å
Loop
- Sequence
- GUCAUAAGC
- Length
- 9 nucleotides
- Bulged bases
- 9C8K|1|1|C|1660, 9C8K|1|1|A|1663, 9C8K|1|1|G|1665
- QA status
- Unknown status
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_9C8K_028 not in the Motif Atlas
- Homologous match to HL_8P9A_223
- Geometric discrepancy: 0.3882
- The information below is about HL_8P9A_223
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- Not in a motif group
- Basepair signature
- Not available
- Number of instances in this motif group
- 0
Unit IDs
9C8K|1|1|G|1658
9C8K|1|1|U|1659
9C8K|1|1|C|1660
9C8K|1|1|A|1661
9C8K|1|1|U|1662
9C8K|1|1|A|1663
9C8K|1|1|A|1664
9C8K|1|1|G|1665
9C8K|1|1|C|1666
Current chains
- Chain 1
- 18S ribosomal RNA
Nearby chains
- Chain Q
- uS9
- Chain S
- uS13
- Chain T
- 40S ribosomal protein eS19
- Chain U
- uS10
- Chain d
- uS14
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