HL_9C9P_003

3D structure

PDB id

9C9P (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cas9 ternary complex, 14-nt sgRNA, State I (linear)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.1 Å

Loop

Sequence

UGAAAA

Length

6 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_9C9P_003 not in the Motif Atlas

Geometric match to HL_5FJC_003

Geometric discrepancy: 0.1007

The information below is about HL_5FJC_003

Detailed Annotation

GNRA

Broad Annotation

No text annotation

Motif group

HL_34789.5

Basepair signature

cWW-F-F-F-F

Number of instances in this motif group

428

Unit IDs

9C9P|1|B|U|72
9C9P|1|B|G|73
9C9P|1|B|A|74
9C9P|1|B|A|75
9C9P|1|B|A|76
9C9P|1|B|A|77

Current chains

Chain B

sgRNA

Nearby chains

Chain A

CRISPR-associated endonuclease Cas9/Csn1