HL_9CG5_002

3D structure

PDB id

9CG5 (explore in PDB, NAKB, or RNA 3D Hub)

Description

70S initiation complex (tRNA-fMet M1 + UUG start codon)

Experimental method

ELECTRON MICROSCOPY

Resolution

2.59 Å

Loop

Sequence

AAGCUUGCUU

Length

10 nucleotides

Bulged bases

9CG5|1|A|U|85

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_9CG5_002 not in the Motif Atlas

Geometric match to HL_5NFV_001

Geometric discrepancy: 0.288

The information below is about HL_5NFV_001

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_69752.4

Basepair signature

cWW-F

Number of instances in this motif group

7

Unit IDs

9CG5|1|A|A|80
9CG5|1|A|A|81
9CG5|1|A|G|82
9CG5|1|A|C|83
9CG5|1|A|U|84
9CG5|1|A|U|85
9CG5|1|A|G|86
9CG5|1|A|C|87
9CG5|1|A|U|88
9CG5|1|A|U|89

Current chains

Chain A

16S ribosomal RNA

Nearby chains