HL_9CG5_006

3D structure

PDB id

9CG5 (explore in PDB, NAKB, or RNA 3D Hub)

Description

70S initiation complex (tRNA-fMet M1 + UUG start codon)

Experimental method

ELECTRON MICROSCOPY

Resolution

2.59 Å

Loop

Sequence

UGAGAG

Length

6 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_9CG5_006 not in the Motif Atlas

Homologous match to HL_4LFB_007

Geometric discrepancy: 0.0527

The information below is about HL_4LFB_007

Detailed Annotation

GNRA

Broad Annotation

No text annotation

Motif group

HL_34789.1

Basepair signature

cWW-F-F-F-F

Number of instances in this motif group

335

Unit IDs

9CG5|1|A|U|296
9CG5|1|A|G|297
9CG5|1|A|A|298
9CG5|1|A|G|299
9CG5|1|A|A|300
9CG5|1|A|G|301

Current chains

Chain A

16S ribosomal RNA

Nearby chains

Chain D

30S ribosomal protein S4

Chain E

30S ribosomal protein S5

Chain L

30S ribosomal protein S12

Chain Q

30S ribosomal protein S17