HL_9CG5_051

3D structure

PDB id

9CG5 (explore in PDB, NAKB, or RNA 3D Hub)

Description

70S initiation complex (tRNA-fMet M1 + UUG start codon)

Experimental method

ELECTRON MICROSCOPY

Resolution

2.59 Å

Loop

Sequence

CGAAUAG

Length

7 nucleotides

Bulged bases

9CG5|1|a|U|615

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_9CG5_051 not in the Motif Atlas

Geometric match to HL_7KKV_003

Geometric discrepancy: 0.2591

The information below is about HL_7KKV_003

Detailed Annotation

GNRA

Broad Annotation

No text annotation

Motif group

HL_34789.1

Basepair signature

cWW-F-F-F-F

Number of instances in this motif group

335

Unit IDs

9CG5|1|a|C|611
9CG5|1|a|G|612
9CG5|1|a|A|613
9CG5|1|a|A|614
9CG5|1|a|U|615
9CG5|1|a|A|616
9CG5|1|a|G|617

Current chains

Chain a

23S ribosomal RNA

Nearby chains

Chain e

50S ribosomal protein L4