HL_9CG6_011

3D structure

PDB id

9CG6 (explore in PDB, NAKB, or RNA 3D Hub)

Description

70S initiation complex (tRNA-fMet M1 + GUG start codon)

Experimental method

ELECTRON MICROSCOPY

Resolution

2.61 Å

Loop

Sequence

GUUAAUACC

Length

9 nucleotides

Bulged bases

9CG6|1|A|U|467

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_9CG6_011 not in the Motif Atlas

Homologous match to HL_5J7L_012

Geometric discrepancy: 0.2842

The information below is about HL_5J7L_012

Detailed Annotation

GNRA wlth extra near cWW

Broad Annotation

GNRA wlth extra near cWW

Motif group

HL_81538.2

Basepair signature

cWW-tSH-F-F-F-F

Number of instances in this motif group

16

Unit IDs

9CG6|1|A|G|462
9CG6|1|A|U|463
9CG6|1|A|U|464
9CG6|1|A|A|465
9CG6|1|A|A|466
9CG6|1|A|U|467
9CG6|1|A|A|468
9CG6|1|A|C|469
9CG6|1|A|C|470

Current chains

Chain A

16S ribosomal RNA

Nearby chains