HL_9CG6_059

3D structure

PDB id

9CG6 (explore in PDB, NAKB, or RNA 3D Hub)

Description

70S initiation complex (tRNA-fMet M1 + GUG start codon)

Experimental method

ELECTRON MICROSCOPY

Resolution

2.61 Å

Loop

Sequence

(PSU)GCUAACG

Length

8 nucleotides

Bulged bases

9CG6|1|a|U|958, 9CG6|1|a|C|961

QA status

Modified nucleotides: PSU

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_9CG6_059 not in the Motif Atlas

Homologous match to HL_7A0S_026

Geometric discrepancy: 0.1755

The information below is about HL_7A0S_026

Detailed Annotation

GNRA

Broad Annotation

No text annotation

Motif group

HL_34789.1

Basepair signature

cWW-F-F-F-F

Number of instances in this motif group

335

Unit IDs

9CG6|1|a|PSU|955
9CG6|1|a|G|956
9CG6|1|a|C|957
9CG6|1|a|U|958
9CG6|1|a|A|959
9CG6|1|a|A|960
9CG6|1|a|C|961
9CG6|1|a|G|962

Current chains

Chain a

23S ribosomal RNA

Nearby chains

Chain b

5S ribosomal RNA; 5S rRNA

Chain l

50S ribosomal protein L16