HL_9CG6_060

3D structure

PDB id

9CG6 (explore in PDB, NAKB, or RNA 3D Hub)

Description

70S initiation complex (tRNA-fMet M1 + GUG start codon)

Experimental method

ELECTRON MICROSCOPY

Resolution

2.61 Å

Loop

Sequence

GAAACAAC

Length

8 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_9CG6_060 not in the Motif Atlas

Homologous match to HL_5J7L_160

Geometric discrepancy: 0.1609

The information below is about HL_5J7L_160

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_42998.2

Basepair signature

cWW-F-F-F-F-F-F

Number of instances in this motif group

7

Unit IDs

9CG6|1|a|G|978
9CG6|1|a|A|979
9CG6|1|a|A|980
9CG6|1|a|A|981
9CG6|1|a|C|982
9CG6|1|a|A|983
9CG6|1|a|A|984
9CG6|1|a|C|985

Current chains

Chain a

23S ribosomal RNA

Nearby chains

Chain p

50S ribosomal protein L20

Chain q

50S ribosomal protein L21

Chain y

50S ribosomal protein L30