HL_9CG6_080

3D structure

PDB id

9CG6 (explore in PDB, NAKB, or RNA 3D Hub)

Description

70S initiation complex (tRNA-fMet M1 + GUG start codon)

Experimental method

ELECTRON MICROSCOPY

Resolution

2.61 Å

Loop

Sequence

GUG(6MZ)AGAUGC

Length

10 nucleotides

Bulged bases

9CG6|1|a|6MZ|2030, 9CG6|1|a|A|2031, 9CG6|1|a|G|2032

QA status

Modified nucleotides: 6MZ

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_9CG6_080 not in the Motif Atlas

Homologous match to HL_5J7L_183

Geometric discrepancy: 0.0765

The information below is about HL_5J7L_183

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_61996.3

Basepair signature

cWW-tWH-F-F-F

Number of instances in this motif group

7

Unit IDs

9CG6|1|a|G|2027
9CG6|1|a|U|2028
9CG6|1|a|G|2029
9CG6|1|a|6MZ|2030
9CG6|1|a|A|2031
9CG6|1|a|G|2032
9CG6|1|a|A|2033
9CG6|1|a|U|2034
9CG6|1|a|G|2035
9CG6|1|a|C|2036

Current chains

Chain a

23S ribosomal RNA

Nearby chains

Chain d

50S ribosomal protein L3

Chain q

50S ribosomal protein L21

Chain z

50S ribosomal protein L32