HL_9CG6_096

3D structure

PDB id

9CG6 (explore in PDB, NAKB, or RNA 3D Hub)

Description

70S initiation complex (tRNA-fMet M1 + GUG start codon)

Experimental method

ELECTRON MICROSCOPY

Resolution

2.61 Å

Loop

Sequence

CUUUAAG

Length

7 nucleotides

Bulged bases

9CG6|1|a|U|2797, 9CG6|1|a|A|2800

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_9CG6_096 not in the Motif Atlas

Homologous match to HL_5J7L_200

Geometric discrepancy: 0.3221

The information below is about HL_5J7L_200

Detailed Annotation

UNCG variation

Broad Annotation

UNCG variation

Motif group

HL_08100.1

Basepair signature

cWW-F-F-F

Number of instances in this motif group

4

Unit IDs

9CG6|1|a|C|2795
9CG6|1|a|U|2796
9CG6|1|a|U|2797
9CG6|1|a|U|2798
9CG6|1|a|A|2799
9CG6|1|a|A|2800
9CG6|1|a|G|2801

Current chains

Chain a

23S ribosomal RNA

Nearby chains