HL_9CGU_004

3D structure

PDB id

9CGU (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cas9 ternary complex, 14-nt sgRNA, State II (kinked)

Experimental method

ELECTRON MICROSCOPY

Resolution

3 Å

Loop

Sequence

GAGUC

Length

5 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_9CGU_004 not in the Motif Atlas

Geometric match to HL_6AEG_004

Geometric discrepancy: 0.2543

The information below is about HL_6AEG_004

Detailed Annotation

tRNA D-loop

Broad Annotation

No text annotation

Motif group

HL_32617.8

Basepair signature

cWW-F-F-F

Number of instances in this motif group

7

Unit IDs

9CGU|1|B|G|87
9CGU|1|B|A|88
9CGU|1|B|G|89
9CGU|1|B|U|90
9CGU|1|B|C|91

Current chains

Chain B

sgRNA

Nearby chains

Chain A

CRISPR-associated endonuclease Cas9/Csn1