HL_9CN3_012

3D structure

PDB id

9CN3 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Human 39S mitoribosome in complex with antibiotic Linezolid

Experimental method

ELECTRON MICROSCOPY

Resolution

2.62 Å

Loop

Sequence

GGAACAGC

Length

8 nucleotides

Bulged bases

9CN3|1|A|A|2110, 9CN3|1|A|G|2113

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_9CN3_012 not in the Motif Atlas

Homologous match to HL_9DFE_025

Geometric discrepancy: 0.2025

The information below is about HL_9DFE_025

Detailed Annotation

GNRA

Broad Annotation

No text annotation

Motif group

HL_34789.5

Basepair signature

cWW-F-F-F-F

Number of instances in this motif group

428

Unit IDs

9CN3|1|A|G|2107
9CN3|1|A|G|2108
9CN3|1|A|A|2109
9CN3|1|A|A|2110
9CN3|1|A|C|2111
9CN3|1|A|A|2112
9CN3|1|A|G|2113
9CN3|1|A|C|2114

Current chains

Chain A

16S rRNA

Nearby chains

Chain I

39S ribosomal protein L10, mitochondrial

Chain N

39S ribosomal protein L16, mitochondrial

Chain o

Ribosomal protein 63, mitochondrial