HL_9CN3_030

3D structure

PDB id

9CN3 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Human 39S mitoribosome in complex with antibiotic Linezolid

Experimental method

ELECTRON MICROSCOPY

Resolution

2.62 Å

Loop

Sequence

AUAACU

Length

6 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_9CN3_030 not in the Motif Atlas

Geometric match to HL_8P9A_123

Geometric discrepancy: 0.081

The information below is about HL_8P9A_123

Detailed Annotation

GNRA

Broad Annotation

No text annotation

Motif group

HL_34789.5

Basepair signature

cWW-F-F-F-F

Number of instances in this motif group

428

Unit IDs

9CN3|1|A|A|2902
9CN3|1|A|U|2903
9CN3|1|A|A|2904
9CN3|1|A|A|2905
9CN3|1|A|C|2906
9CN3|1|A|U|2907

Current chains

Chain A

16S rRNA

Nearby chains

Chain 1

39S ribosomal protein L33, mitochondrial

Chain 3

39S ribosomal protein L35, mitochondrial